Resources

Neural Data Science

Use MATLAB to build predictive models based on neuroscience data and author neuroscience data stories

3-D Brain Tumor Segmentation Using Deep Learning

This example illustrates the use of a 3-D convolutional neural network (CNN) for brain tumor detection based on pixel-wise semantic segmentation.

Getting Started with Deep Learning Toolbox - Documentation
Machine Learning Algorithms - Overview
MATLAB Live Editor - Overview
Case Studies in Neural Data Analysis - Book

Electrophysiology

Use MATLAB tools to explore and analyze neural time-series data

Time-Varying Coherence: Reveal Time-Varying Patterns Common in Two Signals

This example shows how to use wavelet coherence to look for time-localized coherent oscillatory behavior. It uses two NIRS time series from a pair of interacting subjects.

EEGLAB: A Toolbox for Processing Electrophysiological Data - Community Toolbox
FieldTrip: MATLAB Software Toolbox for MEG and EEG Analysis - Community Toolbox
Third-Party Products for EEG, MEG, and ECoG - Resource Collection
Analyzing Neural Time Series Data: Theory and Practice - Book

Related Products: Signal Processing Toolbox, Wavelet Toolbox

Neuroimaging and Microscopy

Use MATLAB tools to visualize and analyze structural and functional image datasets

Explore 3D Volumetric Data with Volume Viewer App

This example loads an MRI study of the human head and explores the data using the visualization capabilities of the Volume Viewer.

Statistical Parametric Mapping (SPM): Software for the Analysis of Brain Imaging Data Sequences - Community Toolbox
ObjectFinder: Recognize 3D Structures in Volumetric Images - File Exchange
Register Multimodal 3D Medical Images - Example
3D Volumetric Image Processing - Documentation

Experiment Control

Use MATLAB and Simulink to run neuroscience experiments

Automated Control of Cellular Neuroscience Experiments with Image Processing

Fully Automated Cell-Targeted Patch-Clamping In Vivo

This article illustrates how Data Acquisition Toolbox, community toolboxes, and third-party products were used to automate a complex experiment.

Psychophysics Toolbox - Community Toolbox
Hardware Support from Data Acquisition Toolbox - Hardware Support
BCI Teaching-Lab: Brain-Computer Interface for Teaching and Research Labs - Third-Party Product