Max - consider renaming your figure handle from Plot to (say) plotFigHandle or something that is a little different from the MATLAB built-in function plot.
Once you have create the figure, then try grabbing the current axes from that figure and setting the hold property to on
plotFigureHandle = figure;
set(plotFigureHandle, 'Position', [306,200, 1610,1085]);
set(plotFigureHandle,'name','Plot','numbertitle','off');
plotAxesHandle = gca;
hold(plotAxesHandle,'on');
And then you can plot multiple plot lines to the figure using the plotAxesHandle
x=-2*pi:0.0001:2*pi;
y=sin(x);
plot(plotAxesHandle,x,y,'b')
plot(plotAxesHandle,x,y+0.5,'r')
Try the above and see what happens!