This repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti htt

Electrophysiology-Tutorial-for-Neuroscience_jpThis repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti

This is a tutorial for key data analysis steps used by neuroscientists - filtering, spike extraction, PCA, clustering, and spectral analysis

Electrophysiology data analysis

Clarinet is a MATLAB^® app designed to analyze electrophysiology experiments.Developed for neuroscience research, Clarinet allows you to analyze neuronal signals acquired with a variety of

Import and Plot WinWCP Patch Clamp Electrophysiology Files into MATLAB

Data Acquisition System

App developed for cardiac electrophysiology research

Application developed for cardiac electrophysiology research. By David de Diego Maffrand, at ITACA institute, UPV.

Wrapper for MATLAB DAQ. Easy recording, instrument control for experiments. e.g. electrophysiology.

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels da

💣 Bombcell: find bombshell cells! 💣 Manual curation of electrophysiology spike sorted units is slow, laborious, and hard to standardize and reproduce. Bombcell is a powerful toolbox that addresses

A toolbox for biological signal modeling and processing, written mainly in Matlab

Fast and accurate spike sorting toolbox

Brainstorm: Open source application for MEG/EEG data analysis

Brainstorm is a collaborative, open-source application dedicated to the analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal electrophysiology. Our objective is to share a

A utility to browse data files that involve one or more channels of data over time.

Plotting and Analysis of Neuroscience Database-Oriented Research Applications

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. PANDORA: Makes database management accessible from your electrophysiology project; Works

a version of abfload which is capable of reading abf 2.0 files

Computes the peri-stimulus time histogram for neural spike times

A spike raster plot from spike time stamps with optional trial and group data.

Anakyze spike trains exported from multi-electrode arrays

Plots dose/response curve and calculates EC50 and Hill Coefficient.

Plotting Routine to display neural spike trains

Set of functions for the basic analysis of spike data from neurophysiological experiments

A class wrapper for the MODTRAN 5 atmospheric radiative transfer code.

Real time channel streaming with the CED's Power1401 device.

Estimating inhibition, excitation and total synaptic conductance from intracellular recordings.

Detection of location of spike times

Implements an improved regularity analysis for spike trains obtained from auditory neurons.

Plots spike rasters from spike times or binary trains. Faster than most implementations.

abfload imports data in the Axon abf format (three different recording modes).

Simulink implementation of a sophisticated ventricular action potential

myocyte electrophysiology: a theoretical investigation.Biophys J. 2007 92:1522-1543.The action potential is elicited by the block named Stimulus : 1 Hz is the initial condition.Initial conditions of the

Toolbox for the analysis of spontaneous and evoked synaptic currents or potentials.

This function identifies and removes spikes fra a trace of and membrane potential recording.

Software for acquisition and manipulation of electrophysiological data from neurons.

Demo simulator of a firing biological neuron.

Algorithm from Fraser and Schwartz, "Recording from the same neurons chronically in motor cortex"

Kernel density estimation with bandwidths locally adapted to data.

Read files generated by the Intan Technologies GUI for recording multichannel data.

A MATLAB toolbox for interacting with the Allen Brain Observatory

2Large-scale neural probe recordings"ephys" (electrophysiology)detailsVisual Coding 2P 3Two-photon calcium imaging"ophys" (optical physiology)detailsThe Visual Coding datasets are both collected from the living

Matlab class to import HEKA Patchmaster files

Instructions and m-files for setting up a remote-controlled multielectrode dish perfusion system.

Identifies groups of linearly independent columns in a cell array A

Detect postsynaptic currents or potentials

This code can be used to spectrally analyze a an ABR ASCII waveform by windowing and zero padding.

Utilities for managing Neuropixel SpikeGLX datasets, Kilosort2 sorting, waveform extraction and other tools

SQUEAKYSPK: Matlab class for making extracellular, microelectrode array data squeaky clean.

Extract Hodgkin-Huxley type ion channel parameters from a Neurofit report file.

Detailed simulation of neural activity in three-dimensional patches of brain tissue

Robust pelectrophysiology tools with GPU acceleration

for electrophysiology. Core features include noise-resistant signal processing, robust statistics & extensive hardware acceleration.ElectroCUDA is intended for any multichannel field potential

A MEX function to read a PLX data file (Plexon, Inc.).

SincResample resamples signals to arbitrary lengths/frequencies and/or timeshifts them

Matlab code for interacting with the Open Ephys GUI.

Obtains the current source density from local field potential data recorded from a linear electrode array

Calculates AP amplitude and timing, half-widths, threshold voltage, and frequency of firing

Spike Detection

MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is pa

Matlab-based spike sorter for NEV files

A function to plot rasters of neural spikes from a matrix of spike times.

Toolbox for batch analysis of postsynaptic current from neuronal recording

Spike Extraction Tool

Load I and V traces from a pClamp ABF file that contains voltage clamp data

Raster and PETH for neuroscientists and others :)

calculates peri-stimulus time histogram (PSTH) + variance of neural spike times