3D convolutional auto encoder

조회 수: 2 (최근 30일)
Juuso Korhonen
Juuso Korhonen 2021년 3월 29일
I try to define a 3D convolutional auto encoder, but when trying to train my training error just stays the same. Here is my structure:
layers = [
image3dInputLayer([120 160 120 1], 'Name', 'Input', 'Normalization',"none") %??
convolution3dLayer([3 3 3], 10, 'Name', 'conv1', "Padding", "same", 'Stride', [1 1 1])
reluLayer('Name', 'relu1')
maxPooling3dLayer([2 2 2], "Stride", [2 2 2], "Name", 'max1')
convolution3dLayer([3 3 3], 10, 'Name', 'conv2', "Padding", "same", 'Stride', [1 1 1])
reluLayer('Name', 'relu2')
maxPooling3dLayer([2 2 2], "Stride", [2 2 2], "Name", 'max2')
convolution3dLayer([3 3 3], 10, 'Name', 'conv3', "Padding", "same", 'Stride', [1 1 1])
reluLayer('Name', 'relu3')
maxPooling3dLayer([2 2 2], "Stride", [2 2 2], "Name", 'max3')
dropoutLayer(0.5, "Name", 'drop')
convolution3dLayer([3 3 3], 10, 'Name', 'conv4', "Padding", "same", 'Stride', [1 1 1])
reluLayer('Name', 'relu4')
resize3dLayer("OutputSize",[30 40 30], 'Method', "nearest", 'Name','up1')
convolution3dLayer([3 3 3], 10, 'Name', 'conv5', "Padding", "same", 'Stride', [1 1 1])
reluLayer('Name', 'relu5')
resize3dLayer("OutputSize",[60 80 60], 'Method',"nearest", 'Name','up2')
convolution3dLayer([3 3 3], 10, 'Name', 'conv6', "Padding", "same", 'Stride', [1 1 1])
reluLayer('Name', 'relu6')
convolution3dLayer([1 1 1], 1, 'Name', 'concatenation', "Padding", "same", 'Stride', [1 1 1])
resize3dLayer("OutputSize",[120 160 120], 'Method', "nearest", 'Name','up31') %??
sigmoidLayer('Name', 'sigmoid') %??
regressionLayer('Name', 'reglayer')
];
lgraph = layerGraph(layers);
Especially I would like to know if the combining of the final feature maps is done correctly with the last convolution3dLayer, since I couldn't find a suitable layer for it in 3D. Also, if the use of sigmoid before the output is suitable? If I use normal reluLayer, the training error just goes to Inf.
I do the training the following way:
imdsTrain = transform(imdsTrain, @resize2AE,'IncludeInfo',true);
[net, info] = trainNetwork(imdsTrain, lgraph, options);
% Where the resize2AE function is
function [dataOut,info] = resize2AE(data,info)
numRows = size(data,1);
dataOut = cell(numRows,2);
% since ReadSize is expected to be >1, data comes in cell form containing
% multiple images
for idx = 1:numRows
% get the image out of the datacell
D = data{idx,1};
D = single(D);
D = imresize3(D, [120, 160, 120]);
D = normalize(D, 'range'); % normalize to [0,1] range
dataOut(idx,:) = {D,D}; % This is supposed to work for AE!!!!!!!
end
end
Can you spot some errors?

답변 (0개)

카테고리

Help CenterFile Exchange에서 Image Data Workflows에 대해 자세히 알아보기

제품


릴리스

R2020b

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by