Trying to find the error in logic
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There is some problem in the logic of this code. It is supposed to segment the lungs from chest radiographs for the set threshold but it is not doing that correctly (providing same results for any threshold value).
clear; clc; close all;
%% Loading images
Threshold = 240;
raw_x_ray='ee.png';
I=imread(raw_x_ray);
figure(101);
imshow(I);
colormap(gray);
title('Grayscale X-Ray');
I=wiener2(I, [7 7]);
figure(102);
subplot(2,1,1);
imshow(I);
subplot(2,1,2);
imhist(I, 256);
a_thresh = I >= Threshold; % set this threshold
[labelImage, numberOfBlobs] = bwlabel(a_thresh);
props = regionprops(a_thresh,'all');
sortedSolidity = sort([props.Solidity], 'descend');
SB = sortedSolidity(1);
if SB == 1
binaryImage = imbinarize(I); figure(103);
imshow(binaryImage); colormap(gray);
SE = strel('square',3);
morphologicalGradient = imsubtract(imdilate(binaryImage, SE),imerode(binaryImage, SE));
mask = imbinarize(morphologicalGradient,0.03);
SE = strel('square',2);
mask = imclose(mask, SE);
mask = imfill(mask,'holes');
mask = bwareafilt(mask,2); % control number of area show
notMask = ~mask;
mask = mask | bwpropfilt(notMask,'Area',[-Inf, 5000 - eps(5000)]);
showMaskAsOverlay(0.5,mask,'r'); % you have to download app/function showMaskAsOverlay
BW2 = imfill(binaryImage,'holes');
new_image = BW2 ;
new_image(~mask) = 0; % invert background and holes
B=bwboundaries(new_image); % can only accept 2 dimensions
figure(104);
imshow(new_image);
ss = strcat('Result_',num2str(Threshold),'.mat');
save(ss,'new_image');
hold on
visboundaries(B);
im8 = im2uint8(new_image);
imwrite(im8, 'ccc.png')
end
댓글 수: 2
John Petersen
2020년 3월 2일
It would help if you could narrow it down a little more and maybe explain what is wrong about it?
답변 (1개)
Daniel Vieira
2020년 3월 2일
편집: Daniel Vieira
2020년 3월 2일
the Threshold parameter doesn't matter at all in your code. you binarize the image with the threshold, measure solidity of blobs, take the largest solidity, and if it's 1 (which is extremely likely) then you throw the previous binarization away and binarize again with default values of imbinarize. I'm not sure that's what you intended to do, but to me it seems unntentional, I don't think this approach goes anywhere.
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