My code doesn't work the second time

조회 수: 11 (최근 30일)
Ayesha ch
Ayesha ch 2016년 4월 12일
편집: Stephen23 2016년 4월 12일
I'm using the following code for nucleus subtraction and then median filtering. My code works fine the first time but the second time I run it, the subtraction doesn't work. Could anyone please tell me what I'm doing wrong?
close all;
he=imread('2.jpg');
% imshow(he), title('original');
% filter
h=[1 1 1; 1 1 1; 1 1 1]/9;
b=imfilter(he,h);
% figure, imshow(b), title('filtered');
% segmentation
cform = makecform('srgb2lab');
lab_he = applycform(he,cform);
ab = double(lab_he(:,:,2:3));
nrows = size(ab,1);
ncols = size(ab,2);
ab = reshape(ab,nrows*ncols,2);
nColors = 3;
% repeat the clustering 3 times to avoid local minima
[cluster_idx, cluster_center] = kmeans(ab,nColors,'distance','sqEuclidean', ...
'Replicates',3);
pixel_labels = reshape(cluster_idx,nrows,ncols);
% imshow(pixel_labels,[]), title('image labeled by cluster index');
segmented_images = cell(1,3);
rgb_label = repmat(pixel_labels,[1 1 3]);
for k = 1:nColors
color = he;
color(rgb_label ~= k) = 0;
segmented_images{k} = color;
end
% imshow(segmented_images{1}), title('objects in cluster 1');
% imshow(segmented_images{2}), title('objects in cluster 2');
% figure, imshow(segmented_images{3}), title('objects in cluster 3');
mean_cluster_value = mean(cluster_center,2);
[tmp, idx] = sort(mean_cluster_value);
blue_cluster_num = idx(1);
L = lab_he(:,:,1);
blue_idx = find(pixel_labels == blue_cluster_num);
L_blue = L(blue_idx);
is_light_blue = im2bw(L_blue,graythresh(L_blue));
nuclei_labels = repmat(uint8(0),[nrows ncols]);
nuclei_labels(blue_idx(is_light_blue==false)) = 1;
nuclei_labels = repmat(nuclei_labels,[1 1 3]);
blue_nuclei = he;
blue_nuclei(nuclei_labels ~= 1) = 0;
% figure, imshow(blue_nuclei), title('blue nuclei');
% segmentation ends here
% erosion
se = strel('ball',9,9);
e=imerode(blue_nuclei,se);
% figure, imshow(e), title('erosion');
% reconstruction erosion as marker
IM = imreconstruct(e,segmented_images{2});
% figure, imshow(IM), title('reconstructed');
% In as Mask on original image
In=b.*IM;
% figure, imshow(In), title('masked');
% Subtraction
I=imsubtract(b,In);
figure, imshow(I), title('subtracted');
figure, imshow(he);
% median filter
g=rgb2gray(I);
J = imnoise(g,'salt & pepper',0.02);
K = medfilt2(g, [3 3]);
figure, imshow(J), figure, imshow(K);

답변 (0개)

카테고리

Help CenterFile Exchange에서 Image Filtering and Enhancement에 대해 자세히 알아보기

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by