Is there any built-in code in MATLAB that calculates phi-psi angles in pdb file as the bio.pdb module in biopython does?
조회 수: 9(최근 30일)
표시 이전 댓글
Bio.pdb module in biopython helps in calculating the dihedral angles (phi-psi angles)
for poly_index, poly in enumerate(polypeptides) :
phi_psi = poly.get_phi_psi_list()
for res_index, residue in enumerate(poly) :
phi, psi = phi_psi[res_index]
Since I found MATLAB easier than biopython, I wanted to know if there's a way to calculate the dihedral angles in MATLAB itself.
댓글 수: 0
Arthur Goldsipe 2023년 1월 30일
Yes, take a look at the ramachandran function. It's primarily designed to show these angles in a Ramachadran plot, but it has options to turn off the plot and return these angles as an output.
댓글 수: 1
Find more on Biotech and Pharmaceutical in Help Center and File Exchange
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!Start Hunting!