According to Matlab support it is due to a bug in Matlab 2011b (possibly older versions too), which was solved in 2012a and later. I updated to 2013b and now I don't get that error anymore.
CGIR assertion 'fitsType<size_t>()' failed when Code Generating
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I was trying to Code Generate a Simulink model into a dll when I got the following error:
CGIR assertion 'fitsType<size_t>()' failed
Unexpected or internal error encountered in "in CGIR: b:\matlab\derived\win32\src\include\cg_ir\util_prim\../../../../../../src/cg_ir/export/include/cg_ir/util_prim/Size64.hpp line 125: fitsType<size_t>() ". Please report this to MathWorks if you can cause it to recur
I think I've managed to locate the problem to this location:

Any ideas?
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