how to run a .mfile in a loop and to save results of each itteration seperatly

i have a .mfile....and o/p of it is set of arrays.....i need it to run 2 times and have to store it in two different set of arrays seperatly ....and this has to be done automatically...
thanks in advance,

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You have to make some changes in your code. Create a cell array to hold your data.
my_data_cell = cell(size_of_data, N_iterations);
Add a flag (N_iterations) signalling each iteration and save your data to a different cell column on each iteration.

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a flag is just another variable. In the example given, N_iterations could be your flag.

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