Matrix multiplication to get covariance matrix

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Tintin Milou
Tintin Milou 2021년 5월 12일
댓글: James Tursa 2021년 5월 18일
Hi,
Is there any chance that the following code could be optimized? The matrices are not sparse. I wonder whether the fact that the matrix A doesn't change might make it possible to pre-calculate an expression before the loop to avoid the double multiplication in this A*V*A' term.
Notes :
Since B is symmetric, V will be symmetric, too.
The matrix A can be rank-deficient and therefore V will also be rank-deficient.
Thank you!
T = 500;
N = 1200;
Vt = zeros(N,N,T);
B = randn(N,N);
B = (B+B')/2;
A = randn(N,N);
for t = 1:T
Vt(:,:,t+1) = A*Vt(:,:,t)*A'+B;
end

답변(2개)

Jan
Jan 2021년 5월 12일
No, there is no chance for a significant speedup or vectorization, because the result of the former iteration is the input of the current one. One tiny improvement is to pre-allocate Vt to the exact matching size:
Vt = zeros(N, N, T + 1);
% ^^^
  댓글 수: 4
Tintin Milou
Tintin Milou 2021년 5월 14일
Ok, Walter. I think theoretically, Vt is symmetric. It's just that Matlab's calculations are not 100% precise. For my purpose, I do not care about any differences from zero of that magnitude. I noticed that transforming the matrices to 'single' helps quite a bit in terms of speed and it is precise enough for my purpose. But that's a different issue.

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James Tursa
James Tursa 2021년 5월 17일
편집: James Tursa 2021년 5월 17일
@Tintin Milou MATLAB variables do not have a "symmetric" attribute flag that I know of. Just because you create a variable that is symmetic with an expression such as (A+A') doesn't mean that MATLAB will necessarily know downstream that the matrix is symmetric. To MATLAB this result is simply just another matrix, and any subsequent operation downstream that depended on symmetry would have to check all the elements. Some functions will do this check but others will not.
There are certain matrix multiplication expressions that MATLAB can recognize where the result will necessarily be symmetric, and in those cases MATLAB can call symmetric BLAS routines in the background to speed up calculations and obtain an exact symmetric result. E.g.,
A = an arbitrary real matrix
C = A' * A is recognized by MATLAB as being symmetric and it will call a symmetric BLAS routine in the background.
The C result will take less time and the result is guaranteed to be exactly symmetric.
B = A'
D = B * A is not recognized by MATLAB as being symmetric, so a generic BLAS routine will be used.
The D result will take more time and the result is not guaranteed to be exactly symmetric. MATLAB doesn't keep track of where B came from and doesn't know it is exactly the transpose of A, so it doesn't do any symmetric optimizations for the operation.
And for the different expression A * B * A' where B is symmetric, MATLAB does not check that B is symmetric so it doesn't know that the result will be symmetric. There are no symmetric optimizations taken for this case, and generic matrix multiplies are done instead with the result not guaranteed to be exactly symmetric because of floating point arithmetic effects.
  댓글 수: 2
James Tursa
James Tursa 2021년 5월 18일
There does appear to be several unused bits in the mxArray flags int field that could be used for this. E.g., an isSymmetric and/or isHermitian bit. Functions could examine this and force exact symmetric results when appropriate. The main complication might be the parser recognizing expressions that result in symmetry and appropriately setting the bit(s).

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