i want to make this overlapping cell segmentation same as this link. but when i using their coding in my coding they not work. they have some error. but i dont know how to solve it. please see the link and my coding in pdf

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izyan hanum
izyan hanum 2015년 4월 19일
this is my coding
Image Analyst
Image Analyst 2015년 4월 19일
There are so many line breaks introduced by the PDF that it would take long than I'm willing to spend for you to fix them. Please attach the m-file itself.
clc;
close all;
clear;
workspace;
format long g;
format compact;
fontSize = 14;
figure;
set(gcf, 'Renderer', 'Painters');
folder = 'C:\Users\User\Pictures';
baseFileName = 'N8.jpg';
fullFileName = fullfile(folder, baseFileName);
if ~exist(fullFileName, 'file')
fullFileName = baseFileName;
if ~exist(fullFileName, 'file')
errorMessage = sprintf('Error: %s does not exist.', fullFileName);
uiwait(warndlg(errorMessage));
return;
end
end
rgbImage = imread(fullFileName);
[rows, columns, numberOfColorBands] = size(rgbImage);
figure(1),subplot(3, 3, 2);
imshow(rgbImage);
title('Original Sputum Image', 'FontSize', fontSize);
set(gcf, 'Units', 'Normalized', 'Outerposition', [0, 0, 1, 1]);
hsv = rgb2hsv(rgbImage);
hImage = hsv(:, :, 1);
sImage = hsv(:, :, 2);
vImage = hsv(:, :, 3);
figure(1),subplot(3, 3, 4);
imshow(hImage, []);
title('Hue Image', 'FontSize', fontSize);
figure(1),subplot(3, 3, 5);
imshow(sImage, []);
title('Saturation Image', 'FontSize', fontSize);
figure(1),subplot(3, 3, 6);
imshow(vImage, []);
title('Value Image', 'FontSize', fontSize);
hueBinary = hImage > 0.2 | hImage < 0.1;
saturationBinary = sImage > 0.22;
valueBinary = vImage > 0.28 & vImage < 0.9;
binaryImage = hueBinary & saturationBinary & valueBinary;
binaryImage = bwareaopen(binaryImage, 400);
binaryImage = imfill(binaryImage, 'holes');
figure(2),subplot(2, 2, 1);
imshow(binaryImage, []);
axis on;
title('Opening', 'FontSize', fontSize);
se = strel('disk',10);
afterclosing = imclose(binaryImage,se);
figure(2), subplot (2,2,2), imshow(afterclosing,[]);
axis on;
title('Closing','FontSize', fontSize);
set(gcf, 'Units', 'Normalized', 'Outerposition', [0, 0, 1, 1]);
bw2 = imfill(afterclosing,'holes');
bw3 = imopen(bw2, ones(5,5));
bw4 = bwareaopen(bw3, 40);
bw4_perim = bwperim(bw4);
overlay1 = imoverlay(sImage, bw4_perim, [.3 1 .3]);
imshow(overlay1);
mask_em = imextendedmax(sImage, 30);
imshow(mask_em);
mask_em = imclose(mask_em, ones(5,5));
mask_em = imfill(mask_em, 'holes');
mask_em = bwareaopen(mask_em, 40);
overlay2 = imoverlay(sImage, bw4_perim | mask_em, [.3 1 .3]);
imshow(overlay2);
I_eq_c = imcomplement(I_eq);
I_mod = imimposemin(I_eq_c, ~bw4 | mask_em);
L = watershed(I_mod);
figure(3),imshow(label2rgb(L));
izyan hanum
izyan hanum 2015년 4월 20일
sir i already attach my coding i know the error at overlay
Image Analyst
Image Analyst 2015년 4월 20일
clc;
close all;
clear;
workspace;
format long g;
format compact;
fontSize = 14;
figure;
set(gcf, 'Renderer', 'Painters');
folder = 'C:\Users\User\Pictures';
baseFileName = 'N8.jpg';
fullFileName = fullfile(folder, baseFileName);
if ~exist(fullFileName, 'file')
fullFileName = baseFileName;
if ~exist(fullFileName, 'file')
errorMessage = sprintf('Error: %s does not exist.', fullFileName);
uiwait(warndlg(errorMessage));
return;
end
end
rgbImage = imread(fullFileName);
[rows, columns, numberOfColorBands] = size(rgbImage);
figure(1),subplot(3, 3, 2);
imshow(rgbImage);
title('Original Sputum Image', 'FontSize', fontSize);
set(gcf, 'Units', 'Normalized', 'Outerposition', [0, 0, 1, 1]);
hsv = rgb2hsv(rgbImage);
hImage = hsv(:, :, 1);
sImage = hsv(:, :, 2);
vImage = hsv(:, :, 3);
figure(1),subplot(3, 3, 4);
imshow(hImage, []);
title('Hue Image', 'FontSize', fontSize);
figure(1),subplot(3, 3, 5);
imshow(sImage, []);
title('Saturation Image', 'FontSize', fontSize);
figure(1),subplot(3, 3, 6);
imshow(vImage, []);
title('Value Image', 'FontSize', fontSize);
hueBinary = hImage > 0.2 | hImage < 0.1;
saturationBinary = sImage > 0.22;
valueBinary = vImage > 0.28 & vImage < 0.9;
binaryImage = hueBinary & saturationBinary & valueBinary;
binaryImage = bwareaopen(binaryImage, 400);
binaryImage = imfill(binaryImage, 'holes');
figure(2),subplot(2, 2, 1);
imshow(binaryImage, []);
axis on;
title('Opening', 'FontSize', fontSize);
se = strel('disk',10);
afterclosing = imclose(binaryImage,se);
figure(2), subplot (2,2,2), imshow(afterclosing,[]);
axis on;
title('Closing','FontSize', fontSize);
set(gcf, 'Units', 'Normalized', 'Outerposition', [0, 0, 1, 1]);
bw2 = imfill(afterclosing,'holes');
bw3 = imopen(bw2, ones(5,5));
bw4 = bwareaopen(bw3, 40);
bw4_perim = bwperim(bw4);
overlay1 = imoverlay(sImage, bw4_perim, [.3 1 .3]);
imshow(overlay1);
mask_em = imextendedmax(sImage, 30);
imshow(mask_em);
mask_em = imclose(mask_em, ones(5,5));
mask_em = imfill(mask_em, 'holes');
mask_em = bwareaopen(mask_em, 40);
overlay2 = imoverlay(sImage, bw4_perim | mask_em, [.3 1 .3]);
imshow(overlay2);
I_eq_c = imcomplement(I_eq);
I_mod = imimposemin(I_eq_c, ~bw4 | mask_em);
L = watershed(I_mod);
figure(3),imshow(label2rgb(L));
izyan hanum
izyan hanum 2015년 4월 20일
done sir. thank you for helping me to send .m file here. but please see my error. i want to make as link given but they have error at overlay

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