Image segmentation for each slice in a volume stack

조회 수: 24 (최근 30일)
Jackie
Jackie 2022년 11월 28일
댓글: Jackie 2022년 11월 28일
I am trying to segment the largest boundaries in a cropped image for each slice in a volume. I am using imbinarize, applying a threshold, and then smoothing out the boundaries before using regionprops to calculate the areas of the blobs. I am having trouble getting to the point where I can have a list of areas for each slice in my volume. I believe only the last slice is getting outputted. Here is my code as of now
vol = tiffreadVolume('filename.tiff');
stack = vol(:, :, [224:2:276]);
stack = mat2gray(stack);
[a, rectout] = imcrop(stack(:,:,1))
for i = size(stack,3)
img_crop = imcrop(stack(:, :, i), [rectout]);
imshow(img_crop)
binary_img = imbinarize(img_crop, 0.1);
fill = imfill(binary_img, 'holes')
area_filt = bwareafilt(fill, 5);
imshow(area_filt)
boundaries_trace = bwboundaries(area_filt);
all_areas = regionprops(area_filt, 'Area')
areas = [all_areas.Area];
end

채택된 답변

Matt J
Matt J 2022년 11월 28일
편집: Matt J 2022년 11월 28일
clear areas
for i = size(stack,3):-1:1
...
all_areas = regionprops(area_filt, 'Area');
areas{i} = [all_areas.Area];
end

추가 답변 (0개)

카테고리

Help CenterFile Exchange에서 Image Processing Toolbox에 대해 자세히 알아보기

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by