CSA-QBI and Hough Tractography for Diffusion MRI

I. Aganj, "Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography Toolbox", 2021. www.nitrc.org/projects/csaodf-hough

Aganj, Iman, et al. “Reconstruction of the Orientation Distribution Function in Single- and Multiple-Shell q-Ball Imaging within Constant Solid Angle.” Magnetic Resonance in Medicine, vol. 64, no. 2, Wiley, June 2010, pp. 554–66, doi:10.1002/mrm.22365.

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Aganj, Iman, et al. “A Hough Transform Global Probabilistic Approach to Multiple-Subject Diffusion MRI Tractography.” Medical Image Analysis, vol. 15, no. 4, Elsevier BV, Aug. 2011, pp. 414–25, doi:10.1016/j.media.2011.01.003.

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Aganj, Iman. “Automatic Verification of the Gradient Table in Diffusion-Weighted MRI Based on Fiber Continuity.” Scientific Reports, vol. 8, no. 1, Springer Science and Business Media LLC, Nov. 2018, doi:10.1038/s41598-018-34940-4.

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I. Aganj, G. Prasad, P. Srinivasan, A. Yendiki, P. M. Thompson, and B. Fischl, “Structural brain network augmentation via Kirchhoff's laws,” in Proceedings of the Joint Annual Meeting of ISMRM-ESMRMB, Milan, Italy, 2014. https://cds.ismrm.org/protected/14MProceedings/PDFfiles/2665.pdf

Aganj, Iman, et al. “Exploratory Correlation of the Human Structural Connectome with Non‐MRI Variables in Alzheimer’s Disease.” Alzheimer’s Dementia: Diagnosis, Assessment Disease Monitoring, vol. 15, no. 4, Wiley, Oct. 2023, doi:10.1002/dad2.12511.

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버전	게시됨	릴리스 정보
2.1	2024/5/24	Bug fixes.	다운로드
2.0	2021/6/26	New functions have been added for connectivity computation (connMatrix, FreeSurferLUT) and augmentation (augConnMatrix), and DTI analysis (reconDT, DT2ODF). Further updates and bug fixes.	다운로드
1.13	2018/12/18	Minor update.	다운로드
1.12	2018/11/9	Minor update.	다운로드
1.11	2018/11/5	Minor update.	다운로드
1.1	2018/10/29	The gradient-table verification function checkGradTable.m has been added (Aganj et al, Sci Rep 2018).	다운로드
1.0.6.0	2018/3/14	Minor update.	다운로드
1.0.5.0	2018/3/14	ODFs can now be visualized by choosing either magnitude or orientation color-coding.	다운로드
1.0.4.0	2017/11/21	Minor update in visualization.	다운로드
1.0.3.0	2017/4/18	Minor update.	다운로드
1.0.2.0	2017/4/12	Minor update.	다운로드
1.0.1.0	2017/4/12	Minor update.	다운로드
1.0.0.0	2017/4/11		다운로드

MLA	Aganj, Iman, et al. “Reconstruction of the Orientation Distribution Function in Single- and Multiple-Shell q-Ball Imaging within Constant Solid Angle.” Magnetic Resonance in Medicine, vol. 64, no. 2, Wiley, June 2010, pp. 554–66, doi:10.1002/mrm.22365.
APA	Aganj, I., Lenglet, C., Sapiro, G., Yacoub, E., Ugurbil, K., & Harel, N. (2010). Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle. Magnetic Resonance in Medicine, 64(2), 554–566. Wiley. Retrieved from https://doi.org/10.1002%2Fmrm.22365
BibTeX	@article{Aganj_2010, doi = {10.1002/mrm.22365}, url = {https://doi.org/10.1002%2Fmrm.22365}, year = 2010, month = {jun}, publisher = {Wiley}, volume = {64}, number = {2}, pages = {554--566}, author = {Iman Aganj and Christophe Lenglet and Guillermo Sapiro and Essa Yacoub and Kamil Ugurbil and Noam Harel}, title = {Reconstruction of the orientation distribution function in single- and multiple-shell q-ball imaging within constant solid angle}, journal = {Magnetic Resonance in Medicine} }

MLA	Aganj, Iman, et al. “A Hough Transform Global Probabilistic Approach to Multiple-Subject Diffusion MRI Tractography.” Medical Image Analysis, vol. 15, no. 4, Elsevier BV, Aug. 2011, pp. 414–25, doi:10.1016/j.media.2011.01.003.
APA	Aganj, I., Lenglet, C., Jahanshad, N., Yacoub, E., Harel, N., Thompson, P. M., & Sapiro, G. (2011). A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography. Medical Image Analysis, 15(4), 414–425. Elsevier BV. Retrieved from https://doi.org/10.1016%2Fj.media.2011.01.003
BibTeX	@article{Aganj_2011, doi = {10.1016/j.media.2011.01.003}, url = {https://doi.org/10.1016%2Fj.media.2011.01.003}, year = 2011, month = {aug}, publisher = {Elsevier {BV}}, volume = {15}, number = {4}, pages = {414--425}, author = {Iman Aganj and Christophe Lenglet and Neda Jahanshad and Essa Yacoub and Noam Harel and Paul M. Thompson and Guillermo Sapiro}, title = {A Hough transform global probabilistic approach to multiple-subject diffusion {MRI} tractography}, journal = {Medical Image Analysis} }

MLA	Aganj, Iman. “Automatic Verification of the Gradient Table in Diffusion-Weighted MRI Based on Fiber Continuity.” Scientific Reports, vol. 8, no. 1, Springer Science and Business Media LLC, Nov. 2018, doi:10.1038/s41598-018-34940-4.
APA	Aganj, I. (2018). Automatic Verification of the Gradient Table in Diffusion-Weighted MRI Based on Fiber Continuity. Scientific Reports, 8(1). Springer Science and Business Media LLC. Retrieved from https://doi.org/10.1038%2Fs41598-018-34940-4
BibTeX	@article{Aganj_2018, doi = {10.1038/s41598-018-34940-4}, url = {https://doi.org/10.1038%2Fs41598-018-34940-4}, year = 2018, month = {nov}, publisher = {Springer Science and Business Media {LLC}}, volume = {8}, number = {1}, author = {Iman Aganj}, title = {Automatic Verification of the Gradient Table in Diffusion-Weighted {MRI} Based on Fiber Continuity}, journal = {Scientific Reports} }

MLA	Aganj, Iman, et al. “Exploratory Correlation of the Human Structural Connectome with Non‐MRI Variables in Alzheimer’s Disease.” Alzheimer’s Dementia: Diagnosis, Assessment Disease Monitoring, vol. 15, no. 4, Wiley, Oct. 2023, doi:10.1002/dad2.12511.
APA	Aganj, I., Mora, J., Frau‐Pascual, A., & Fischl, B. (2023). Exploratory correlation of the human structural connectome with non‐MRI variables in Alzheimer’s disease. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, 15(4). Wiley. Retrieved from http://dx.doi.org/10.1002/dad2.12511
BibTeX	@article{Aganj_2023, title={Exploratory correlation of the human structural connectome with non‐MRI variables in Alzheimer’s disease}, volume={15}, ISSN={2352-8729}, url={http://dx.doi.org/10.1002/dad2.12511}, DOI={10.1002/dad2.12511}, number={4}, journal={Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring}, publisher={Wiley}, author={Aganj, Iman and Mora, Jocelyn and Frau‐Pascual, Aina and Fischl, Bruce}, year={2023}, month=oct }

CSA-QBI and Hough Tractography for Diffusion MRI

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