Displays a set of HMM profile alignments
|Array of sequences. |
Names for the sequences. Enter a cell array of character vectors.
Pairwise alignment scores from the function
your default Web browser and displays a set of prealigned sequences
to an HMM model profile. The output is aligned corresponding to the
Match states — Uppercase letters
Insert states — Lowercase letters or asterisks (*)
Delete states — Dashes
Periods (.) are added at positions corresponding to inserts in other sequences. The input sequences must have the same number of profile states, that is, the joint count of capital letters and dashes must be the same.
the sequences with
the displayed sequences using
load('hmm_model_examples','model_7tm_2') %load model load('hmm_model_examples','sequences') %load sequences for ind =1:length(sequences) [scores(ind),sequences(ind).Aligned] =... hmmprofalign(model_7tm_2,sequences(ind).Sequence); end hmmprofmerge(sequences, scores)