plotContours

Below is a demonstration of the features of the plotContours function

Contents

clear; close all; clc;

Syntax

[handleCell]=plotContours(contourSet,optionStruct);

Description

This function plots segmented contours

Import image data for this demo

defaultFolder = fileparts(fileparts(mfilename('fullpath'))); %Set main folder
pathNameImageData=fullfile(defaultFolder,'data','DICOM','0001_human_calf');
loadNameImageData=fullfile(pathNameImageData,'IMDAT','IMDAT.mat');
IMDAT_struct=load(loadNameImageData); %The image data structure
G = IMDAT_struct.G; %Geometric/spatial information
v=G.v; %The voxel size
M= IMDAT_struct.type_1; %The image data

Example: Visualize a segmented contour

In this example the contour data is first loaded and then the plotting is done.

Visualize image data

sv3(M,v);
drawnow;

Add contour plots

contourName='imseg_calf_tibia'; %Contour name
optionStruct.pathName=fullfile(defaultFolder,'data','imseg'); %Folder name for contours

%Plot contours
plotContours(contourName,optionStruct);

Example: Visualize a set of segmented contours

In this example the contour data is loaded by the plotting function. Only contour file and path names are passed to the plot function.

Visualize image data

sv3(M,v);
drawnow;

Add contour plots

%Contour names
contourSet={'imseg_calf_skin',...
            'imseg_calf_muscle_fat',...
            'imseg_calf_tibia',...
            'imseg_calf_fibula'};

%Fill option structure
optionStruct.LineWidth=5; %Line width
optionStruct.Color=gjet(numel(contourSet));
optionStruct.pathName=fullfile(defaultFolder,'data','imseg'); %Folder name for contours
optionStruct.hAxis=gca; %Axis to plot in

%Plot contours
handleCell=plotContours(contourSet,optionStruct);

GIBBON www.gibboncode.org

Kevin Mattheus Moerman, gibbon.toolbox@gmail.com

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License: https://github.com/gibbonCode/GIBBON/blob/master/LICENSE

GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for image segmentation, image-based modeling, meshing, and finite element analysis.

Copyright (C) 2019 Kevin Mattheus Moerman

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.