Import SBML file with function definitions into SimBiology

버전 1.1.0.1 (8.98 KB) 작성자: Jeremy Huard
Functions to import SBML files containing function definitions into SimBiology.
다운로드 수: 304
업데이트 날짜: 2016/9/1

라이선스 보기

These functions allow you to import SBML files containing function definitions into SimBiology.
Two methods are available:
- sbmlimportFunExternal
This function saves each function definition as separated MATLAB function in the current directory.
The resulting SimBiology model supports the 'Model acceleration' mode.
Function definitions containing the MathML function 'piecewise' are also supported.
In that case, to ensure that the ODE solver registers the transitions events are added to the SimBiology model.
- sbmlimportFunReplace
This function replaces all function calls in the reaction rates by the associated expressions.
The resulting SimBiology model supports the 'Model acceleration' mode.
It does not support the use of the MathML function 'piecewise' in the function definitions.
Usage:
sbmlimportFunExternal()
sbmlimportFunExternal(filename)
sbmlimportFunReplace()
sbmlimportFunReplace(filename)

인용 양식

Jeremy Huard (2024). Import SBML file with function definitions into SimBiology (https://www.mathworks.com/matlabcentral/fileexchange/51551-import-sbml-file-with-function-definitions-into-simbiology), MATLAB Central File Exchange. 검색됨 .

MATLAB 릴리스 호환 정보
개발 환경: R2015a
모든 릴리스와 호환
플랫폼 호환성
Windows macOS Linux
카테고리
Help CenterMATLAB Answers에서 QSP, PKPD, and Systems Biology에 대해 자세히 알아보기
커뮤니티
 SimBiology 커뮤니티에 더 많은 파일이 있습니다

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!
버전 게시됨 릴리스 정보
1.1.0.1

Updated license

1.1.0.0

-Both methods:
* better warning handling
* replace math and logical operators in SBML functions and event triggers

- sbmlimportFunExternal:
* add events for 'piecewise' calls only if trigger contains non-constant parameters, species or volumes.

1.0.0.0

- Updated function headers.
- sbmlimportFunExternal: Piecewise function defined in a separated MATLAB file instead of a subfunction.