Main Content

Calculate Sensitivities

Determine which model components are sensitive to specific conditions or drugs

Functions

sbioelementaryeffectsPerform global sensitivity analysis (GSA) by computing elementary effects (requires Statistics and Machine Learning Toolbox)
sbiosobolPerform global sensitivity analysis by computing first- and total-order Sobol indices (requires Statistics and Machine Learning Toolbox)
sbiompgsaPerform multiparametric global sensitivity analysis (requires Statistics and Machine Learning Toolbox)
sbiosimulateSimulate SimBiology model
sbioacceleratePrepare model object for accelerated simulations
createSimFunctionCreate SimFunction object
sbiosampleparametersGenerate parameters by sampling covariate model (requires Statistics and Machine Learning Toolbox software)
sbiosampleerrorSample error based on error model and add noise to simulation data
addconfigsetCreate configuration set object and add to model object
getconfigsetGet configuration set object from model object
getsensmatrix (SimData)Get 3-D sensitivity matrix from SimData object

Objects

SimBiology.gsa.ElementaryEffectsObject containing results from calculation of elementary effects for global sensitivity analysis (GSA)
SimBiology.gsa.SobolObject containing first- and total-order Sobol indices
SimBiology.gsa.MPGSAObject containing multiparametric global sensitivity analysis (MPGSA) results
SensitivityAnalysisOptionsSpecify sensitivity analysis options
SimDataSimulation data
ConfigsetSolver settings information for model simulation
SolverOptionsSpecify model solver options
RuntimeOptionsOptions for logged species
CompileOptionsDimensional analysis and unit conversion options
SimFunctionFunction-like interface to execute SimBiology models
SimFunctionSensitivitySimFunctionSensitivity object, subclass of SimFunction object
ScenariosSimulation scenarios

Apps

SimBiology Model BuilderBuild QSP, PK/PD, and mechanistic systems biology models interactively
SimBiology Model AnalyzerAnalyze QSP, PK/PD, and mechanistic systems biology models

Examples and How To

App Workflow

Programmatic Workflow

Concepts